Built for real data
Canvas views draw only what is on screen, so a thousand-sequence alignment or distance matrix costs the same as a small one.
react-bio-viz
Interactive, consistently controllable React components for alignments, trees, distance matrices and genomes — and the same components as Jupyter widgets.
A 100-sequence protein alignment, live — scroll to pan, Ctrl/⌘-scroll to zoom, drag the minimap:
One state contract
Every piece of interactive state — viewport, selection, row order, tree arrangement — can be uncontrolled, controlled, or kept in your own store. Learn it once.
Views that link
An alignment, its distance matrix and its tree can share one row order: reorder one and the others follow.
Python too
The same components as Jupyter widgets, with every piece of state a synced traitlet.
Components
Section titled “Components”MultipleSequenceAlignmentColour schemes, tracks, selection, reordering and editing.
PhyloTreeThree layouts, rerooting, collapsing, drag-to-rotate, styling.
DistanceMatrixA pairwise distance heatmap that scales to thousands of rows.
GeneModel · GenomeBrowser · BlastHitDistributionGenes, genome tracks and BLAST hits on a shared genomic axis.